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LOC_001H3KQ.1
Download
Download FASTA
Download metadata TSV
Display Name: Tajikistan/LOC_001H3KQ.1/2023-05-23
J. D'Addiego,
M. Mullojanova,
T. Hikmatov,
F. Tishkova &
R. Hewson
Sample details
Collection date
2023-05-23
Collection date (lower bound)
2023-05-23
Collection date (upper bound)
2023-05-23
Earliest release date
2025-07-27
Collection country
Tajikistan
Isolate name
CCHFV_30_185
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-02-09 21:05
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
UK Health Security Agency, Research & Evaluation
INSDC
NCBI release date
2025-07-27
INSDC accession L
PV953859.1
INSDC accession M
PV953858.1
INSDC accession S
PV953857.1
Host
Host taxon id
176092
Host name scientific
Hyalomma anatolicum
Alignment and QC metrics L
Length L
12122
Total SNPs L
1420
Total inserted nucs L
40
Total deleted nucs L
3
Total ambiguous nucs L
245
Total unknown nucs L
300
Total frame shifts L
0
Completeness L
95.31%
Total stop codons L
0
Alignment and QC metrics M
Length M
4809
Total SNPs M
836
Total inserted nucs M
1
Total deleted nucs M
0
Total ambiguous nucs M
32
Total unknown nucs M
0
Total frame shifts M
0
Completeness M
87.52%
Total stop codons M
0
Alignment and QC metrics S
Length S
1671
Total SNPs S
215
Total inserted nucs S
16
Total deleted nucs S
0
Total ambiguous nucs S
37
Total unknown nucs S
0
Total frame shifts S
0
Completeness S
89.59%
Total stop codons S
0
Submission details
Submission ID
PV953859.1.L/PV953858.1.M/PV953857.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-02-09 21:05:35 UTC
Date released
2026-02-09 21:11:00 UTC
Files
Annotations
LOC_001H3KQ.1.embl
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
L
A
35
G
G
43
C
C
48
T
T
49
C
C
59
T
T
62
C
C
64
T
T
65
G
G
71
T
A
72
T
C
85
T
G
93
A
A
109
G
G
112
A
T
121
C
T
131
A
C
136
T
T
151
C
Show more
M
T
538
G
G
547
C
C
551
A
T
553
A
C
557
T
A
565
G
A
566
G
C
569
T
G
577
A
T
578
G
A
583
T
T
584
C
G
588
A
C
589
A
A
594
C
T
595
A
A
597
G
T
599
A
Show more
S
T
16
A
C
31
G
T
32
C
G
34
A
A
45
G
C
48
T
T
63
C
A
84
G
A
98
T
A
102
G
C
126
T
T
141
C
C
150
T
T
166
C
A
173
G
G
174
A
G
180
A
C
183
T
Show more
Deletions
11996, 12086, 12087
Insertions
ins_67:CT, ins_11931:AT, ins_12051:TAGTCCAATTCTTTCARY, ins_12108:YTGATTATTTCTAGGGTG, ins_5165:A, ins_0:TCTCAAAGAAACACGT
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
GPC
GPC:
P
155
T
GPC:
P
157
S
GPC:
T
160
A
GPC:
P
161
S
GPC:
S
164
A
GPC:
K
165
N
GPC:
S
166
P
GPC:
G
167
E
GPC:
D
169
A
GPC:
N
170
S
GPC:
L
171
I
GPC:
A
172
E
GPC:
T
173
N
GPC:
N
174
S
GPC:
P
176
Q
GPC:
P
178
L
GPC:
T
180
A
GPC:
R
182
D
Show more
NP
NP:
Y
20
F
NP:
K
45
R
NP:
D
116
E
NP:
N
150
H
NP:
Q
179
L
NP:
D
199
E
NP:
R
270
K
NP:
S
275
N
NP:
R
428
K
RdRp
RdRp:
S
6
N
RdRp:
S
19
T
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
V
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
L
90
I
RdRp:
I
114
V
RdRp:
T
163
A
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
K
275
R
RdRp:
I
279
V
RdRp:
V
352
I
Show more
Deletions
None
Insertions
None
L (unaligned)
M (unaligned)
S (unaligned)
L (aligned)
M (aligned)
S (aligned)
Aligned amino acid sequences
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