This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_001H30V.1

Display Name: Kazakhstan/LOC_001H30V.1/2024
B. M. A. Maxat, M. G. K. Gulzhan, M. K. T. Kydyrbay, S. S. K. Serik, K. B. A. Balzhan & N. B. R. Botagoz

Sample details

Collection date
2024
Collection date (lower bound)
2024-01-01
Collection date (upper bound)
2024-12-31
Earliest release date
2025-05-21
Collection country
Kazakhstan
Collection subdivision level 1
Turkestan, Arys
Isolate name
KAZ/154/2025

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-02-09 21:05insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Kazakh Scientific Research Veterinary Institute

INSDC

NCBI release date
2025-05-21
INSDC accession L
INSDC accession S

Host

Host taxon id
Host name scientific
Ixodoidea

Alignment and QC metrics L

Length L
528
Total SNPs L
88
Total inserted nucs L
0
Total deleted nucs L
0
Total ambiguous nucs L
0
Total unknown nucs L
0
Total frame shifts L
0
Completeness L
4.36%
Total stop codons L
0

Alignment and QC metrics S

Length S
484
Total SNPs S
71
Total inserted nucs S
0
Total deleted nucs S
0
Total ambiguous nucs S
0
Total unknown nucs S
0
Total frame shifts S
0
Completeness S
26.80%
Total stop codons S
0

Submission details

Submission ID
PV646618.1.L/PV646617.1.S
Submitting group
Date submitted
2026-02-09 21:05:35 UTC
Date released
2026-02-09 21:09:52 UTC

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_005301.3 & OL774851.1 references

Substitutions

L

  • A526G
  • C529T
  • T535C
  • G538T
  • C541T
  • T550G
  • G553A
  • A563G
  • A565T
  • A571G
  • G578A
  • G583A
  • C586T
  • G589A
  • A590G
  • C595T
  • G597A
  • T601C

    • S

  • T141C
  • C150T
  • G155A
  • A164G
  • T166C
  • A173G
  • G174A
  • G180A
  • C183T
  • A186G
  • C201T
  • G231A
  • T234A
  • G240A
  • A252C
  • T261C
  • T267C
  • T273C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3 & OL774851.1 references

    Substitutions

    NP

  • NP:S39N
  • NP:N42S
  • NP:K45R
  • NP:D116E
  • NP:N150H
  • NP:Q179L

    • RdRp

  • RdRp:T163A
  • RdRp:A168T
  • RdRp:M172V
  • RdRp:R174K
  • RdRp:S205P
  • RdRp:N206Y
  • RdRp:T215A
  • RdRp:K275R
  • RdRp:I279V
    • Deletions
    None
    Insertions
    None

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