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LOC_001H0MP.1
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Download FASTA
Download metadata TSV
Display Name: Pakistan/LOC_001H0MP.1/2024-07-16
M. Umair,
R. Hakim,
Z. Jamal &
M. Salman
Sample details
Collection date
2024-07-16
Collection date (lower bound)
2024-07-16
Collection date (upper bound)
2024-07-16
Earliest release date
2024-11-12
Collection country
Pakistan
Collection subdivision level 1
Punjab
Isolate name
CCHF/NIHPAK-41/2024
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-02-09 21:05
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
National Institute of Health, Department of Virology
INSDC
NCBI release date
2024-11-12
INSDC accession L
PQ523729.1
INSDC accession M
PQ523726.1
INSDC accession S
PQ523722.1
Host
Host taxon id
9606
Host name scientific
Homo sapiens
Alignment and QC metrics L
Length L
12104
Total SNPs L
1594
Total inserted nucs L
22
Total deleted nucs L
0
Total ambiguous nucs L
0
Total unknown nucs L
266
Total frame shifts L
0
Completeness L
97.59%
Total stop codons L
0
Alignment and QC metrics M
Length M
5287
Total SNPs M
116
Total inserted nucs M
0
Total deleted nucs M
0
Total ambiguous nucs M
0
Total unknown nucs M
149
Total frame shifts M
0
Completeness M
94.15%
Total stop codons M
0
Alignment and QC metrics S
Length S
1590
Total SNPs S
201
Total inserted nucs S
0
Total deleted nucs S
0
Total ambiguous nucs S
0
Total unknown nucs S
60
Total frame shifts S
0
Completeness S
84.72%
Total stop codons S
0
Submission details
Submission ID
PQ523729.1.L/PQ523726.1.M/PQ523722.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-02-09 21:05:35 UTC
Date released
2026-02-09 21:09:52 UTC
Files
Annotations
LOC_001H0MP.1.embl
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
L
A
35
G
G
43
T
T
49
C
C
63
G
C
64
T
T
65
C
T
66
C
T
68
C
G
69
A
G
71
C
C
85
T
G
88
A
G
93
A
A
109
G
C
117
A
A
124
G
T
131
A
T
139
C
Show more
M
G
65
A
A
127
G
G
145
A
C
151
T
T
178
C
T
189
C
T
211
C
T
220
C
T
242
C
A
244
G
T
247
C
T
249
C
T
262
C
T
263
C
T
268
C
T
278
A
A
298
G
C
375
T
Show more
S
C
31
G
T
63
C
A
65
G
A
84
G
A
93
G
A
98
T
C
99
T
A
102
G
C
150
T
G
153
A
T
156
C
T
166
C
A
173
G
G
174
A
A
186
G
C
192
T
C
201
T
G
231
A
Show more
Deletions
None
Insertions
ins_58:T, ins_11917:CA, ins_12054:TACAATTTT, ins_12083:ACTATTC, ins_12108:TTT
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
GPC
GPC:
V
34
A
GPC:
V
54
A
GPC:
S
59
P
GPC:
S
64
T
GPC:
P
96
L
GPC:
T
110
A
GPC:
P
130
L
GPC:
S
131
N
GPC:
T
138
A
GPC:
Y
144
R
GPC:
K
168
E
GPC:
T
180
A
GPC:
H
210
Q
GPC:
S
211
L
GPC:
L
214
S
GPC:
I
239
P
GPC:
I
401
L
GPC:
I
432
V
Show more
NP
NP:
N
9
S
NP:
Y
20
F
NP:
K
45
R
NP:
V
83
A
NP:
Q
179
L
NP:
D
186
N
NP:
D
199
E
NP:
R
270
K
NP:
A
307
V
NP:
E
322
D
NP:
Q
405
L
NP:
R
428
K
RdRp
RdRp:
S
6
N
RdRp:
A
14
D
RdRp:
S
19
T
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
V
RdRp:
V
82
I
RdRp:
I
114
V
RdRp:
T
163
A
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
I
223
V
RdRp:
K
275
R
RdRp:
I
279
V
RdRp:
R
302
K
Show more
Deletions
None
Insertions
None
L (unaligned)
M (unaligned)
S (unaligned)
L (aligned)
M (aligned)
S (aligned)
Aligned amino acid sequences
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