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LOC_001H0LR.1
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Download FASTA
Download metadata TSV
Display Name: Pakistan/LOC_001H0LR.1/2024-07-12
M. Umair,
R. Hakim,
Z. Jamal &
M. Salman
Sample details
Collection date
2024-07-12
Collection date (lower bound)
2024-07-12
Collection date (upper bound)
2024-07-12
Earliest release date
2024-11-12
Collection country
Pakistan
Collection subdivision level 1
Punjab
Isolate name
CCHF/NIHPAK-37/2024
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-02-09 21:05
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
National Institute of Health, Department of Virology
INSDC
NCBI release date
2024-11-12
INSDC accession L
PQ523728.1
INSDC accession M
PQ523725.1
INSDC accession S
PQ523721.1
Host
Host taxon id
9606
Host name scientific
Homo sapiens
Alignment and QC metrics L
Length L
12140
Total SNPs L
1631
Total inserted nucs L
47
Total deleted nucs L
0
Total ambiguous nucs L
0
Total unknown nucs L
0
Total frame shifts L
0
Completeness L
99.88%
Total stop codons L
0
Alignment and QC metrics M
Length M
5345
Total SNPs M
1239
Total inserted nucs M
11
Total deleted nucs M
41
Total ambiguous nucs M
0
Total unknown nucs M
0
Total frame shifts M
0
Completeness M
99.52%
Total stop codons M
0
Alignment and QC metrics S
Length S
1655
Total SNPs S
220
Total inserted nucs S
1
Total deleted nucs S
0
Total ambiguous nucs S
0
Total unknown nucs S
0
Total frame shifts S
0
Completeness S
91.58%
Total stop codons S
0
Submission details
Submission ID
PQ523728.1.L/PQ523725.1.M/PQ523721.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-02-09 21:05:35 UTC
Date released
2026-02-09 21:09:52 UTC
Files
Annotations
LOC_001H0LR.1.embl
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
OR047158.1
&
OL774851.1
references
Substitutions
L
G
23
T
A
35
G
G
43
T
T
49
C
C
63
G
C
64
T
T
65
C
T
66
C
T
68
C
G
69
A
G
71
C
C
85
T
G
88
A
G
93
A
A
109
G
C
117
A
A
124
G
T
131
A
Show more
M
G
29
A
C
30
G
G
31
T
G
32
A
G
36
A
G
37
A
A
39
T
A
40
G
A
41
T
G
43
A
T
44
A
G
45
C
G
46
T
C
47
T
G
48
T
T
49
G
C
51
G
G
52
C
Show more
S
T
16
A
C
31
G
T
32
C
G
34
A
A
45
G
C
48
T
A
84
G
A
98
T
A
102
G
C
126
T
T
141
C
C
150
T
G
153
A
T
166
C
A
173
G
C
183
T
A
186
G
C
201
T
Show more
Deletions
5211-5214, 5244, 5268-5303
Insertions
ins_58:T, ins_11917:CA, ins_12053:CTAC, ins_12086:CTACTATTCCAC, ins_12108:TTTATTATTTCTGGGGTGTGGGGGGAAC, ins_5401:TGCGTGCCGCC, ins_0:T
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
OR047158.1
&
OL774851.1
references
Substitutions
GPC
GPC:
M
1
N
GPC:
L
2
M
GPC:
F
3
L
GPC:
H
4
P
GPC:
F
5
L
GPC:
E
6
K
GPC:
H
7
S
GPC:
I
11
T
GPC:
V
14
I
GPC:
F
15
L
GPC:
I
18
L
GPC:
L
19
F
GPC:
G
23
S
GPC:
L
25
V
GPC:
A
26
T
GPC:
D
27
S
GPC:
E
28
G
GPC:
A
29
G
Show more
NP
NP:
Y
20
F
NP:
K
45
R
NP:
D
116
E
NP:
N
150
H
NP:
Q
179
L
NP:
D
199
E
NP:
R
270
K
NP:
S
275
N
NP:
R
428
K
RdRp
RdRp:
S
6
N
RdRp:
A
14
D
RdRp:
S
19
T
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
V
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
I
114
V
RdRp:
T
163
A
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
A
202
V
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
I
223
V
RdRp:
K
275
R
Show more
Deletions
None
Insertions
None
L (unaligned)
M (unaligned)
S (unaligned)
L (aligned)
M (aligned)
S (aligned)
Aligned amino acid sequences
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