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LOC_001H04Q.1
Download
Download FASTA
Download metadata TSV
Display Name: North_Macedonia/LOC_001H04Q.1/2024
D. Jakimovski,
P. Banovic,
B. Zana,
A. Abraham,
Z. Lanszki,
T. Gorfol,
Z. Tauber,
A. Kuczmog,
K. Banyai &
G. Kemenesi
Sample details
Collection date
2024
Collection date (lower bound)
2024-01-01
Collection date (upper bound)
2024-07-24
Earliest release date
2024-07-24
Collection country
North Macedonia
Isolate name
Kriva Palanka/North Macedonia-1/2024
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-02-09 21:05
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
University of Pecs, Szentagothai Research Center
INSDC
NCBI release date
2024-07-24
INSDC accession L
PQ031236.1
INSDC accession M
PQ031235.1
INSDC accession S
PQ031237.1
Host
Host taxon id
9606
Host name scientific
Homo sapiens
Alignment and QC metrics L
Length L
12138
Total SNPs L
1294
Total inserted nucs L
41
Total deleted nucs L
0
Total ambiguous nucs L
0
Total unknown nucs L
314
Total frame shifts L
0
Completeness L
97.32%
Total stop codons L
0
Alignment and QC metrics M
Length M
5341
Total SNPs M
1032
Total inserted nucs M
1
Total deleted nucs M
3
Total ambiguous nucs M
0
Total unknown nucs M
0
Total frame shifts M
0
Completeness M
97.91%
Total stop codons M
0
Alignment and QC metrics S
Length S
1649
Total SNPs S
257
Total inserted nucs S
0
Total deleted nucs S
0
Total ambiguous nucs S
0
Total unknown nucs S
0
Total frame shifts S
0
Completeness S
91.31%
Total stop codons S
0
Submission details
Submission ID
PQ031236.1.L/PQ031235.1.M/PQ031237.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-02-09 21:05:35 UTC
Date released
2026-02-09 21:09:52 UTC
Files
Annotations
LOC_001H04Q.1.embl
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
L
G
23
T
C
31
A
A
35
G
A
42
T
G
43
C
T
49
C
A
53
G
T
58
C
C
59
T
C
63
T
C
64
G
T
66
C
A
72
G
A
73
C
A
91
G
G
93
A
C
100
T
A
109
G
Show more
M
T
36
A
G
46
A
A
47
G
T
55
C
T
63
C
T
64
C
T
67
A
G
72
C
A
76
G
T
78
C
T
79
C
G
80
A
T
81
C
C
88
T
T
96
C
T
98
C
C
99
T
G
103
A
Show more
S
T
16
A
C
31
G
T
33
C
G
34
T
T
63
C
A
65
G
A
93
G
A
98
T
C
99
T
A
105
G
G
118
A
C
126
T
T
141
C
C
150
T
G
155
A
T
159
A
T
166
C
C
171
T
Show more
Deletions
326-328
Insertions
ins_67:C, ins_11924:G, ins_12092:CTATTCATTCCTGTTTCATTATTTGAAGGGTGTGGGGGG, ins_5167:C
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
GPC
GPC:
I
3
T
GPC:
S
4
L
GPC:
M
6
V
GPC:
Y
7
C
GPC:
A
8
F
GPC:
V
9
I
GPC:
F
10
L
GPC:
C
11
Y
GPC:
C
15
L
GPC:
K
19
G
GPC:
T
20
A
GPC:
N
21
H
GPC:
P
23
Q
GPC:
H
24
S
GPC:
G
26
A
GPC:
N
31
G
GPC:
H
33
N
GPC:
V
34
T
Show more
NP
NP:
N
9
S
NP:
Y
20
F
NP:
V
27
M
NP:
S
39
N
NP:
A
100
S
NP:
S
109
N
NP:
T
111
A
NP:
Q
179
L
NP:
D
199
E
NP:
K
265
R
NP:
R
270
K
NP:
A
307
P
NP:
Y
311
F
NP:
V
327
I
NP:
N
419
S
NP:
R
428
K
RdRp
RdRp:
S
6
N
RdRp:
S
19
T
RdRp:
D
55
A
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
L
RdRp:
K
71
R
RdRp:
R
80
K
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
K
218
R
RdRp:
K
275
R
RdRp:
I
279
V
RdRp:
V
352
I
RdRp:
N
453
S
RdRp:
I
505
T
Show more
Deletions
GPC:77
Insertions
None
L (unaligned)
M (unaligned)
S (unaligned)
L (aligned)
M (aligned)
S (aligned)
Aligned amino acid sequences
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