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LOC_001GX20.1
Download
Download FASTA
Download metadata TSV
Display Name: Pakistan/LOC_001GX20.1/2023-08-26
M. Umair,
S. A. Haider,
Z. Jamal,
M. Ammar,
R. Hakim,
Q. Ali &
M. Salman
Sample details
Collection date
2023-08-26
Collection date (lower bound)
2023-08-26
Collection date (upper bound)
2023-08-26
Earliest release date
2023-12-26
Collection country
Pakistan
Isolate name
CCHF/NIHPAK-19/2023
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-02-09 21:05
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
National Institute of Health, Department of Virology
INSDC
NCBI release date
2023-12-26
INSDC accession L
OR964926.1
INSDC accession M
OR964937.1
INSDC accession S
OR964915.1
Host
Host taxon id
9606
Host name scientific
Homo sapiens
Alignment and QC metrics L
Length L
12094
Total SNPs L
1442
Total inserted nucs L
23
Total deleted nucs L
3
Total ambiguous nucs L
0
Total unknown nucs L
342
Total frame shifts L
0
Completeness L
96.89%
Total stop codons L
0
Alignment and QC metrics M
Length M
5258
Total SNPs M
153
Total inserted nucs M
1
Total deleted nucs M
0
Total ambiguous nucs M
0
Total unknown nucs M
64
Total frame shifts M
0
Completeness M
95.16%
Total stop codons M
0
Alignment and QC metrics S
Length S
1591
Total SNPs S
195
Total inserted nucs S
0
Total deleted nucs S
0
Total ambiguous nucs S
0
Total unknown nucs S
34
Total frame shifts S
0
Completeness S
86.21%
Total stop codons S
0
Submission details
Submission ID
OR964926.1.L/OR964937.1.M/OR964915.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-02-09 21:05:35 UTC
Date released
2026-02-09 21:09:52 UTC
Files
Annotations
LOC_001GX20.1.embl
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
L
G
32
A
A
35
G
T
49
C
T
61
C
C
63
G
C
64
T
T
65
C
T
66
C
G
69
A
G
71
T
G
88
A
G
93
A
A
109
G
G
119
A
A
124
G
T
131
A
C
136
T
T
139
C
Show more
M
G
65
A
A
127
G
G
145
A
C
156
T
T
181
G
T
242
C
A
244
G
A
265
C
T
278
A
T
317
C
A
360
G
C
364
T
C
375
T
C
388
T
G
392
A
G
394
A
A
404
G
A
416
G
Show more
S
C
31
G
T
63
C
A
93
G
A
98
T
A
102
G
C
126
T
C
150
T
G
153
A
T
156
C
T
166
C
A
173
G
A
186
G
C
201
T
G
231
A
A
252
C
T
273
C
G
282
T
T
287
C
Show more
Deletions
12028-12030
Insertions
ins_58:T, ins_11925:GT, ins_12081:TTTAATATCCAACTACTCCA, ins_5215:N
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
GPC
GPC:
P
23
L
GPC:
N
31
K
GPC:
S
64
T
GPC:
Y
77
H
GPC:
E
91
G
GPC:
P
96
L
GPC:
V
102
I
GPC:
S
106
G
GPC:
T
110
A
GPC:
G
118
R
GPC:
T
122
K
GPC:
T
124
S
GPC:
S
131
N
GPC:
S
139
P
GPC:
Y
144
H
GPC:
G
167
S
GPC:
N
170
S
GPC:
L
171
S
Show more
NP
NP:
Y
20
F
NP:
V
83
A
NP:
D
116
E
NP:
A
124
S
NP:
Q
179
L
NP:
D
199
E
NP:
V
254
I
NP:
R
270
K
NP:
A
307
V
NP:
Q
405
L
NP:
R
428
K
RdRp
RdRp:
S
6
N
RdRp:
G
15
S
RdRp:
S
19
T
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
V
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
T
163
A
RdRp:
M
172
V
RdRp:
S
205
P
RdRp:
K
275
R
RdRp:
I
279
V
RdRp:
S
498
G
RdRp:
I
505
T
RdRp:
A
508
V
RdRp:
K
522
R
RdRp:
T
720
S
Show more
Deletions
None
Insertions
None
L (unaligned)
M (unaligned)
S (unaligned)
L (aligned)
M (aligned)
S (aligned)
Aligned amino acid sequences
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