This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_001ELMA.1

Display Name: Tunisia/LOC_001ELMA.1/2024
S. Fabi, G. Di Pietra, E. Valente, M. Bellato, C. Agostini, M. Paccagnella, E. Franchin, V. Chisu, C. Foxi, C. Del Vecchio, I. Castagliuolo, G. Masala & C. Salata

Sample details

Collection date
2024
Collection date (lower bound)
2024-01-01
Collection date (upper bound)
2024-12-31
Earliest release date
2025-07-23
Collection country
Tunisia
Isolate name
CCHFV/TUN/REM/2024/60B

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-02-09 21:05insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
University of Padova, Molecular Medicine

INSDC

NCBI release date
2025-07-23
INSDC accession S

Host

Host taxon id
Host name scientific
Hyalomma sp.

Alignment and QC metrics S

Length S
585
Total SNPs S
103
Total inserted nucs S
0
Total deleted nucs S
0
Total ambiguous nucs S
0
Total unknown nucs S
0
Total frame shifts S
0
Completeness S
34.99%
Total stop codons S
0

Submission details

Submission ID
PV920624.1.S
Submitting group
Date submitted
2026-02-09 21:05:33 UTC
Date released
2026-02-09 21:13:54 UTC

Lineage

Segment S Lineage
I

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • T814G
  • G820A
  • C829G
  • G831A
  • T835C
  • G838C
  • G844A
  • T847C
  • G850A
  • C853T
  • A856G
  • T859A
  • T862C
  • G864A
  • A865G
  • A868C
  • C871T
  • C874T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    NP

  • NP:N258K
  • NP:G259E
  • NP:R270K
  • NP:I277V
  • NP:A285T
  • NP:S301G
  • NP:A307P
  • NP:Y311F
  • NP:T420S
    • Deletions
    None
    Insertions
    None

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