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LOC_001ELKE.1
Download
Download FASTA
Download metadata TSV
Display Name: Tajikistan/LOC_001ELKE.1/2023-05-23
J. D'Addiego,
M. Mullojanova,
T. Hikmatov,
F. Tishkova &
R. Hewson
Sample details
Collection date
2023-05-23
Collection date (lower bound)
2023-05-23
Collection date (upper bound)
2023-05-23
Earliest release date
2025-06-15
Collection country
Tajikistan
Isolate name
CCHFV_22_177
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-02-09 21:05
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
UK Health Security Agency, Research & Evaluation
INSDC
NCBI release date
2025-06-15
INSDC accession L
PV738574.1
INSDC accession M
PV738573.1
INSDC accession S
PV738572.1
Host
Host taxon id
176092
Host name scientific
Hyalomma anatolicum
Alignment and QC metrics L
Length L
11768
Total SNPs L
1159
Total inserted nucs L
38
Total deleted nucs L
3
Total ambiguous nucs L
13
Total unknown nucs L
3202
Total frame shifts L
0
Completeness L
70.35%
Total stop codons L
0
Alignment and QC metrics M
Length M
5296
Total SNPs M
927
Total inserted nucs M
1
Total deleted nucs M
0
Total ambiguous nucs M
9
Total unknown nucs M
422
Total frame shifts M
0
Completeness M
90.64%
Total stop codons M
0
Alignment and QC metrics S
Length S
1237
Total SNPs S
170
Total inserted nucs S
1
Total deleted nucs S
0
Total ambiguous nucs S
1
Total unknown nucs S
21
Total frame shifts S
0
Completeness S
72.61%
Total stop codons S
0
Submission details
Submission ID
PV738574.1.L/PV738573.1.M/PV738572.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-02-09 21:05:33 UTC
Date released
2026-02-09 21:13:54 UTC
Lineage
Segment S Lineage
IV.2
Files
Annotations
LOC_001ELKE.1.embl
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
A
379
G
A
385
T
A
388
G
T
394
A
T
398
C
T
403
C
C
415
T
A
416
G
C
421
T
T
466
C
G
472
A
C
475
T
C
481
T
G
490
A
T
493
C
G
502
A
T
508
A
A
526
G
Show more
M
G
56
A
A
57
C
A
70
G
T
71
A
A
80
G
T
83
C
G
84
T
C
85
T
T
86
C
C
92
T
C
96
T
T
98
C
T
100
C
T
102
C
A
108
T
A
112
G
A
116
T
A
117
G
Show more
S
G
429
A
A
439
G
C
445
T
T
446
C
G
448
C
A
460
G
C
478
T
C
484
A
C
487
T
A
490
G
T
496
C
C
497
T
G
499
A
A
503
C
C
514
T
G
538
A
G
544
A
C
553
A
Show more
Deletions
12000, 12086, 12087
Insertions
ins_11931:AT, ins_12051:TAGTGCAATTCTTTCAGT, ins_12108:TTGATTATTTCTAGGGTG, ins_5171:C, ins_1579:A
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
H
2
Y
GPC:
I
3
T
GPC:
S
4
P
GPC:
M
6
L
GPC:
Y
7
C
GPC:
I
9
V
GPC:
Q
13
K
GPC:
C
15
W
GPC:
G
16
S
GPC:
L
17
S
GPC:
G
18
E
GPC:
E
19
G
GPC:
S
23
L
GPC:
H
24
S
GPC:
R
28
Q
GPC:
N
30
S
GPC:
K
31
N
GPC:
T
32
A
Show more
NP
NP:
N
150
H
NP:
H
195
R
NP:
D
199
E
NP:
I
246
V
NP:
R
270
K
NP:
S
275
N
NP:
S
301
G
NP:
V
436
I
RdRp
RdRp:
I
114
V
RdRp:
I
157
M
RdRp:
T
163
A
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
K
275
R
RdRp:
I
279
V
RdRp:
V
700
I
RdRp:
R
764
K
RdRp:
L
765
P
RdRp:
T
767
A
RdRp:
K
769
E
RdRp:
R
770
K
RdRp:
G
772
K
RdRp:
D
773
E
Show more
Deletions
None
Insertions
None
L (unaligned)
M (unaligned)
S (unaligned)
L (aligned)
M (aligned)
S (aligned)
Aligned amino acid sequences
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