This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_001ELHJ.1

Display Name: Tajikistan/LOC_001ELHJ.1/2023-05-07
J. D'Addiego, M. Mullojanova, T. Hikmatov, F. Tishkova & R. Hewson

Sample details

Collection date
2023-05-07
Collection date (lower bound)
2023-05-07
Collection date (upper bound)
2023-05-07
Earliest release date
2025-06-15
Collection country
Tajikistan
Isolate name
CCHFV_26_26

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-02-09 21:05insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
UK Health Security Agency, Research & Evaluation

INSDC

NCBI release date
2025-06-15
INSDC accession L
INSDC accession S

Host

Host taxon id
Host name scientific
Hyalomma anatolicum

Alignment and QC metrics L

Length L
11699
Total SNPs L
1247
Total inserted nucs L
29
Total deleted nucs L
1
Total ambiguous nucs L
25
Total unknown nucs L
2542
Total frame shifts L
0
Completeness L
75.19%
Total stop codons L
0

Alignment and QC metrics S

Length S
1246
Total SNPs S
169
Total inserted nucs S
1
Total deleted nucs S
0
Total ambiguous nucs S
9
Total unknown nucs S
8
Total frame shifts S
0
Completeness S
73.44%
Total stop codons S
0

Submission details

Submission ID
PV738569.1.L/PV738568.1.S
Submitting group
Date submitted
2026-02-09 21:05:33 UTC
Date released
2026-02-09 21:12:49 UTC

Lineage

Segment S Lineage
IV.2

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • T466C
  • G472A
  • C475T
  • G490A
  • T493C
  • G502A
  • T508A
  • A526G
  • C529T
  • T535C
  • G538T
  • C541T
  • A547G
  • T550G
  • G553A
  • A563G
  • A565T
  • A571G

    • S

  • A425G
  • G428A
  • G429A
  • A439G
  • C445T
  • T446C
  • G448C
  • A457G
  • A460G
  • C472T
  • C484A
  • C487T
  • A490G
  • T496C
  • C497T
  • G499A
  • A503C
  • A520G
    • Deletions
    12000
    Insertions
    ins_11922:TC, ins_12108:CACCGTTCATTTCAGTTTGATTATTTC, ins_1579:A

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    NP

  • NP:T124A
  • NP:G125N
  • NP:N150H
  • NP:H195R
  • NP:I246V
  • NP:R270K
  • NP:S275N
  • NP:S301G
  • NP:V436I

    • RdRp

  • RdRp:I157M
  • RdRp:T163A
  • RdRp:A168T
  • RdRp:M172V
  • RdRp:R174K
  • RdRp:S205P
  • RdRp:N206Y
  • RdRp:K275R
  • RdRp:I279V
  • RdRp:V352I
  • RdRp:S409G
  • RdRp:T481A
  • RdRp:S498G
  • RdRp:I505T
  • RdRp:A508I
  • RdRp:V515I
  • RdRp:R751H
  • RdRp:R764K
    • Deletions
    None
    Insertions
    None

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