This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.
X
Loculus
Organisms
Crimean-Congo Hemorrhagic Fever Virus
SeqSets
Login
Loculus
Organisms
Crimean-Congo Hemorrhagic Fever Virus
CCHF (Multi-Ref)
Test Dummy Organism
Test organism (with files)
Ebola Sudan
Enterovirus
Test organism (without alignment)
West Nile Virus
SeqSets
Login
Docs
API docs
Crimean-Congo Hemorrhagic Fever Virus
|
Browse data
Submit sequences
Select organism section
Browse data
Submit sequences
LOC_001EKVV.1
Download
Download FASTA
Download metadata TSV
Display Name: Tajikistan/LOC_001EKVV.1/2023-07-12
J. D'Addiego,
M. Mullojanova,
T. Hikmatov,
F. Tishkova &
R. Hewson
Sample details
Collection date
2023-07-12
Collection date (lower bound)
2023-07-12
Collection date (upper bound)
2023-07-12
Earliest release date
2025-04-05
Collection country
Tajikistan
Isolate name
CCHFV_C7
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-02-09 21:05
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
UK Health Security Agency, Research & Evaluation
INSDC
NCBI release date
2025-04-05
INSDC accession L
PV390622.1
INSDC accession M
PV390615.1
INSDC accession S
PV390604.1
Host
Host taxon id
9606
Host name scientific
Homo sapiens
Alignment and QC metrics L
Length L
12131
Total SNPs L
1611
Total inserted nucs L
47
Total deleted nucs L
1
Total ambiguous nucs L
26
Total unknown nucs L
1
Total frame shifts L
0
Completeness L
99.59%
Total stop codons L
0
Alignment and QC metrics M
Length M
5311
Total SNPs M
1034
Total inserted nucs M
1
Total deleted nucs M
0
Total ambiguous nucs M
16
Total unknown nucs M
5
Total frame shifts M
0
Completeness M
98.57%
Total stop codons M
0
Alignment and QC metrics S
Length S
1673
Total SNPs S
223
Total inserted nucs S
1
Total deleted nucs S
0
Total ambiguous nucs S
2
Total unknown nucs S
0
Total frame shifts S
0
Completeness S
99.88%
Total stop codons S
0
Submission details
Submission ID
PV390622.1.L/PV390615.1.M/PV390604.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-02-09 21:05:33 UTC
Date released
2026-02-09 21:12:49 UTC
Lineage
Segment S Lineage
IV.2
Files
Annotations
LOC_001EKVV.1.embl
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
A
35
G
G
43
C
C
48
T
T
49
C
C
59
T
C
64
T
T
65
G
G
71
T
A
72
T
C
85
T
G
93
A
C
105
T
A
109
G
G
112
A
T
121
C
T
131
A
C
136
T
C
148
T
Show more
M
A
51
G
A
70
G
T
71
A
A
80
G
T
83
C
G
84
T
C
85
T
T
86
C
C
92
T
C
96
T
T
98
C
T
100
C
T
102
C
T
105
C
A
108
T
A
112
G
A
116
T
A
117
G
Show more
S
T
48
C
G
54
A
A
61
G
C
64
T
G
67
A
T
79
C
A
81
G
G
99
A
A
118
G
C
142
T
T
157
C
C
166
T
C
178
A
T
182
C
G
190
A
G
196
A
C
214
T
C
217
T
Show more
Deletions
11996
Insertions
ins_66:CC, ins_11931:AT, ins_12108:TACCATTCATTTCAGTTTGATTATTTCTAGGGTGKGGGGAGAA, ins_5171:C, ins_1580:C
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
H
2
Y
GPC:
I
3
T
GPC:
S
4
P
GPC:
M
6
L
GPC:
Y
7
C
GPC:
I
9
V
GPC:
Q
13
K
GPC:
C
15
W
GPC:
G
16
S
GPC:
L
17
S
GPC:
G
18
E
GPC:
E
19
G
GPC:
S
23
L
GPC:
H
24
S
GPC:
E
26
G
GPC:
R
28
Q
GPC:
N
30
S
GPC:
K
31
N
Show more
NP
NP:
N
9
S
NP:
R
15
K
NP:
D
116
E
NP:
T
124
A
NP:
G
125
N
NP:
N
150
H
NP:
H
195
R
NP:
D
199
E
NP:
I
246
V
NP:
R
270
K
NP:
S
275
N
NP:
S
301
G
NP:
V
436
I
RdRp
RdRp:
S
6
N
RdRp:
T
10
I
RdRp:
S
19
T
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
V
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
L
90
I
RdRp:
I
114
V
RdRp:
I
157
M
RdRp:
T
163
A
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
K
275
R
Show more
Deletions
None
Insertions
None
L (unaligned)
M (unaligned)
S (unaligned)
L (aligned)
M (aligned)
S (aligned)
Aligned amino acid sequences
Report an issue with this sequence or metadata
Create GitHub issue