This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_001EKTZ.1

Display Name: Tajikistan/LOC_001EKTZ.1/2023-05-23
J. D'Addiego, M. Mullojanova, T. Hikmatov, F. Tishkova & R. Hewson

Sample details

Collection date
2023-05-23
Collection date (lower bound)
2023-05-23
Collection date (upper bound)
2023-05-23
Earliest release date
2025-04-05
Collection country
Tajikistan
Isolate name
CCHFV_23_178

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-02-09 21:05insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
UK Health Security Agency, Research & Evaluation

INSDC

NCBI release date
2025-04-05
INSDC accession M
INSDC accession S

Host

Host taxon id
Host name scientific
Hyalomma anatolicum

Alignment and QC metrics M

Length M
3673
Total SNPs M
330
Total inserted nucs M
1
Total deleted nucs M
0
Total ambiguous nucs M
17
Total unknown nucs M
1647
Total frame shifts M
0
Completeness M
37.42%
Total stop codons M
0

Alignment and QC metrics S

Length S
919
Total SNPs S
112
Total inserted nucs S
0
Total deleted nucs S
0
Total ambiguous nucs S
1
Total unknown nucs S
1
Total frame shifts S
0
Completeness S
54.84%
Total stop codons S
0

Submission details

Submission ID
PV390620.1.M/PV390613.1.S
Submitting group
Date submitted
2026-02-09 21:05:33 UTC
Date released
2026-02-09 21:12:49 UTC

Lineage

Segment S Lineage
IV.2

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

M

  • A1662G
  • T1667C
  • A1679G
  • A1682G
  • A1688G
  • A1694G
  • A1709G
  • G1712A
  • C1715T
  • G1719A
  • C1721T
  • C1724T
  • C1736T
  • G1739A
  • C1760T
  • C1766T
  • A1773G
  • A1778G

    • S

  • G429A
  • A439G
  • C445T
  • T446C
  • G448C
  • A460G
  • C478T
  • C484A
  • C487T
  • A490G
  • T496C
  • C497T
  • G499A
  • A503C
  • C505T
  • A508G
  • C514T
  • G538A
    • Deletions
    None
    Insertions
    ins_5171:C

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    GPC

  • GPC:S524G
  • GPC:G543S
  • GPC:I561V
  • GPC:R579K
  • GPC:N592S
  • GPC:V598T
  • GPC:Y606F
  • GPC:R609K
  • GPC:T633S
  • GPC:K669N
  • GPC:A710V
  • GPC:I717V
  • GPC:R724K
  • GPC:L725F
  • GPC:I778M
  • GPC:V787I
  • GPC:T1369S
  • GPC:S1380A

    • NP

  • NP:N150H
  • NP:H195R
  • NP:D199E
  • NP:V205I
  • NP:L235F
  • NP:I246V
  • NP:R270K
  • NP:S275N
  • NP:S301G
    • Deletions
    None
    Insertions
    None

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