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LOC_001EJ0M.1
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Download FASTA
Download metadata TSV
Display Name: Pakistan/LOC_001EJ0M.1/2024-01-01
M. Umair,
R. Hakim,
Z. Jamal &
M. Salman
Sample details
Collection date
2024-01-01
Collection date (lower bound)
2024-01-01
Collection date (upper bound)
2024-01-01
Earliest release date
2024-11-12
Collection country
Pakistan
Collection subdivision level 1
Sindh
Isolate name
CCHF/NIHPAK-1/2024
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-02-09 21:05
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
National Institute of Health, Department of Virology
INSDC
NCBI release date
2024-11-12
INSDC accession L
PQ523730.1
INSDC accession S
PQ523723.1
Host
Host taxon id
9606
Host name scientific
Homo sapiens
Alignment and QC metrics L
Length L
11906
Total SNPs L
1565
Total inserted nucs L
1
Total deleted nucs L
0
Total ambiguous nucs L
0
Total unknown nucs L
0
Total frame shifts L
0
Completeness L
98.32%
Total stop codons L
0
Alignment and QC metrics S
Length S
1629
Total SNPs S
220
Total inserted nucs S
1
Total deleted nucs S
2
Total ambiguous nucs S
0
Total unknown nucs S
0
Total frame shifts S
0
Completeness S
97.49%
Total stop codons S
0
Submission details
Submission ID
PQ523730.1.L/PQ523723.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-02-09 21:05:33 UTC
Date released
2026-02-09 21:12:49 UTC
Lineage
Segment S Lineage
IV.1
Files
Annotations
LOC_001EJ0M.1.embl
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
G
23
T
A
35
G
G
43
C
T
49
C
C
63
G
C
64
T
T
65
C
T
66
C
G
69
A
G
71
T
G
88
A
G
93
A
A
109
G
A
124
G
T
131
A
C
148
T
T
151
C
T
154
C
Show more
S
T
49
C
A
50
G
G
54
A
G
67
A
A
78
C
T
79
C
C
82
T
G
99
A
T
106
C
A
109
G
A
118
G
A
148
G
C
166
T
G
169
A
T
172
C
C
178
A
T
182
C
G
190
A
Show more
Deletions
1619, 1620
Insertions
ins_58:T, ins_1577:A
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
NP
NP:
N
8
T
NP:
R
15
K
NP:
V
83
A
NP:
D
116
E
NP:
T
124
S
NP:
G
125
N
NP:
H
195
R
NP:
D
199
E
NP:
I
246
V
NP:
R
270
K
NP:
S
301
G
NP:
A
307
V
NP:
E
322
D
NP:
Q
405
L
NP:
V
436
I
RdRp
RdRp:
S
6
N
RdRp:
S
19
T
RdRp:
N
52
H
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
V
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
I
114
V
RdRp:
T
163
A
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
K
275
R
RdRp:
I
279
V
RdRp:
S
498
G
Show more
Deletions
None
Insertions
None
L (unaligned)
M (unaligned)
S (unaligned)
L (aligned)
M (aligned)
S (aligned)
Aligned amino acid sequences
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